BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB036H12LP1|AL430316
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1091 683 0.0
3x_Contig555 652 0.0
3x_Contig1300 608 e-174
>3x_Contig1091
Length = 4701
Score = 683 bits (344), Expect = 0.0
Identities = 580/660 (87%)
Strand = Plus / Minus
Query: 261 taatcaaatagagatgtctgatatcaatgtggtaatcgactccttcgtcgatagattgaa 320
||||||||| |||||||||||||||| || || || || || ||| | |||||| | ||
Sbjct: 4049 taatcaaattaagatgtctgatatcaacgtcgtgattgattctttcattgatagactaaa 3990
Query: 321 gagaaaacaagtggtagaatcctatcaagcaggattagaaacattacaaatcttgatgag 380
|||||||| ||| ||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 3989 aagaaaacaggtgataggatcctatcaagcgtcgttggaaacattacaaatcttgatgag 3930
Query: 381 atatgtttcagctatcagatggacttcgactgaagatttgatattacagattaagaaatt 440
||||||||||||||| |||||||| || ||||| || ||||| |||| || || |||||
Sbjct: 3929 atatgtttcagctattagatggacctctactgatgaactgatagtacaaataaaaaaatt 3870
Query: 441 tggatacagcttagaaaaagctcagccgtacgaatatacatgtggaaatgttgttagacg 500
||| ||| || || ||||| ||||| || ||||| | ||||| ||||||||||||||
Sbjct: 3869 cggaaacaatttggagaaagcacagccatatgaatactcttgtggtaatgttgttagacg 3810
Query: 501 tgtattatctatgatcagagacgagacagaagaagaacagactagtgctgaaccgatgat 560
||||||||| |||||||||||||| | ||| || ||||||| ||||||||| ||||||||
Sbjct: 3809 tgtattatcaatgatcagagacgaaatagaggaggaacagagtagtgctgagccgatgat 3750
Query: 561 atcttcaatgttcaatttattacagaagcctatgactgatacgaagacaaaaaaggtaca 620
||| |||||||| || ||||||||||||| ||||||||||||||||| | |||| ||||
Sbjct: 3749 atcctcaatgtttaacctattacagaagccaatgactgatacgaagacgagaaagataca 3690
Query: 621 ggataacaaactagacgtwaggcaaaccattgttcagtcaattcgtgatcttatagatga 680
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 3689 ggataacaaactagacgtaaggcagaccattgttcaatcaattcgtgatcttatagatga 3630
Query: 681 aattaaaaatatcgatgaaggtattcaacaaatagctattgaattgattcatgatcgtga 740
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3629 aataaaaaatatcgatgaaggtattcaacaaatagctattgaattgattcatgatcgaga 3570
Query: 741 aatcctacttacccctactccagactctaaaaccgttcttcgtttccttctgaaggctag 800
|||||||||||| ||||||||||| || || || ||||||||||||||| ||||||||||
Sbjct: 3569 aatcctacttacacctactccagattcaaagacggttcttcgtttccttttgaaggctag 3510
Query: 801 agaaggtaataatagaaattttactgttttagtgactgaaggattccctaacaacgcaac 860
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct: 3509 agaacgtaataatagaaattttactgttctagtgactgaaggatttcctaacaatacaac 3450
Query: 861 cgtggctcatgaattcgctaaaaaattaagtgaacatgacattgagactattgtwatccc 920
||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 3449 agtggctcatgaattcgccaaaaaactaagtgagcatgacattgagactattgtaatccc 3390
>3x_Contig555
Length = 1912
Score = 652 bits (328), Expect = 0.0
Identities = 336/338 (99%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 1 gatctgcgaaaagaaaatgcttgaaattgacggcgatttgtaaatatagtacatagatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gatctgcgaaaagaaaatgcttgaaattgacggcgatttgtaaatatagtacatagatgt 292
Query: 61 ctaattgcgccctctgagcgacgtttattcctcgttatttttttgcagagtatttttaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctaattgcgccctctgagcgacgtttattcctcgttatttttttgcagagtatttttaca 232
Query: 121 tcactttgcttcgataattaaaatgtaaaamatttcaaccactaacaacataaagagact 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 231 tcactttgcttcgataattaaaatgtaaaaaatttcaaccactaacaacataaagagact 172
Query: 181 catcgcagcaacaaaatcaagcttaaagaatggcaaaagatcgttcgtcaaacgttgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 catcgcagcaacaaaatcaagcttaaagaatggcaaaagatcgttcgtcaaacgttgtca 112
Query: 241 ccactcttataacatcggattaatcaaatagagatgtctgatatcaatgtggtaatcgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ccactcttataacatcggattaatcaaatagagatgtctgatatcaatgtggtaatcgac 52
Query: 301 tccttcgtcgatagattgaagagaaaacaagtggtaga 338
||||||||||||||||||||||| ||||||||||||||
Sbjct: 51 tccttcgtcgatagattgaagag-aaacaagtggtaga 15
>3x_Contig1300
Length = 6589
Score = 608 bits (306), Expect = e-174
Identities = 308/310 (99%)
Strand = Plus / Plus
Query: 611 aaaaggtacaggataacaaactagacgtwaggcaaaccattgttcagtcaattcgtgatc 670
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 aaaaggtacaggataacaaactagacgtaaggcaaaccattgttcagtcaattcgtgatc 60
Query: 671 ttatagatgaaattaaaaatatcgatgaaggtattcaacaaatagctattgaattgattc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttatagatgaaattaaaaatatcgatgaaggtattcaacaaatagctattgaattgattc 120
Query: 731 atgatcgtgaaatcctacttacccctactccagactctaaaaccgttcttcgtttccttc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgatcgtgaaatcctacttacccctactccagactctaaaaccgttcttcgtttccttc 180
Query: 791 tgaaggctagagaaggtaataatagaaattttactgttttagtgactgaaggattcccta 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaaggctagagaaggtaataatagaaattttactgttttagtgactgaaggattcccta 240
Query: 851 acaacgcaaccgtggctcatgaattcgctaaaaaattaagtgaacatgacattgagacta 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaacgcaaccgtggctcatgaattcgctaaaaaattaagtgaacatgacattgagacta 300
Query: 911 ttgtwatccc 920
|||| |||||
Sbjct: 301 ttgtaatccc 310
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7438
Number of Sequences: 1807
Number of extensions: 7438
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 3
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)